HL_6R6G_100

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

ACUUUAAAUCCUU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R6G_100 not in the Motif Atlas

Homologous match to HL_4V88_199

Geometric discrepancy: 0.1694

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6R6G|1|K|A|569
6R6G|1|K|C|570
6R6G|1|K|U|571
6R6G|1|K|U|572
6R6G|1|K|U|573
6R6G|1|K|A|574
6R6G|1|K|A|575
6R6G|1|K|A|576
6R6G|1|K|U|577
6R6G|1|K|C|578
6R6G|1|K|C|579
6R6G|1|K|U|580
6R6G|1|K|U|581

Current chains

Chain K

18S ribosomal RNA

Nearby chains

Chain DD

Ribosomal protein S9 (Predicted)

Chain NN

40S ribosomal protein S24