HL_6R6G_102

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases

6R6G|1|K|G|821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R6G_102 not in the Motif Atlas

Homologous match to HL_4V88_203

Geometric discrepancy: 0.1323

The information below is about HL_4V88_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

6R6G|1|K|U|820
6R6G|1|K|G|821
6R6G|1|K|U|822
6R6G|1|K|U|823
6R6G|1|K|C|824
6R6G|1|K|A|825
6R6G|1|K|A|826
6R6G|1|K|A|827
6R6G|1|K|G|828

Current chains

Chain K

18S ribosomal RNA

Nearby chains

Chain DD

Ribosomal protein S9 (Predicted)

Chain NN

40S ribosomal protein S24

Chain x

40S ribosomal protein S4