HL_6R6P_016

3D structure

PDB id

6R6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGUAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R6P_016 not in the Motif Atlas

Homologous match to HL_8C3A_010

Geometric discrepancy: 0.0967

The information below is about HL_8C3A_010

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6R6P|1|5|C|368
6R6P|1|5|G|369
6R6P|1|5|U|370
6R6P|1|5|A|371
6R6P|1|5|A|372
6R6P|1|5|G|373

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 1

X-box-binding protein 1

Chain C

uL4

Chain j

Ribosomal protein L37

Chain l

ribosomal protein eL39