HL_6R6P_019

3D structure

PDB id

6R6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAAGAG

Length

7 nucleotides

Bulged bases

6R6P|1|5|A|1255

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R6P_019 not in the Motif Atlas

Geometric match to HL_4LFB_012

Geometric discrepancy: 0.3496

The information below is about HL_4LFB_012

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

6R6P|1|5|C|1252
6R6P|1|5|G|1253
6R6P|1|5|A|1254
6R6P|1|5|A|1255
6R6P|1|5|G|1256
6R6P|1|5|A|1257
6R6P|1|5|G|1258

Current chains

Chain 5

28S ribosomal RNA

Nearby chains