HL_6R6P_023

3D structure

PDB id

6R6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCGCUC

Length

6 nucleotides

Bulged bases

6R6P|1|5|G|1408, 6R6P|1|5|U|1410

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R6P_023 not in the Motif Atlas

Geometric match to HL_4OOG_001

Geometric discrepancy: 0.3893

The information below is about HL_4OOG_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_12626.2

Basepair signature

cWW-F

Number of instances in this motif group

17

Unit IDs

6R6P|1|5|G|1406
6R6P|1|5|C|1407
6R6P|1|5|G|1408
6R6P|1|5|C|1409
6R6P|1|5|U|1410
6R6P|1|5|C|1411

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain b

60S ribosomal protein L29