HL_6R6P_046

3D structure

PDB id

6R6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUCUCUUU

Length

9 nucleotides

Bulged bases

6R6P|1|5|C|2627, 6R6P|1|5|U|2631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R6P_046 not in the Motif Atlas

Homologous match to HL_8C3A_037

Geometric discrepancy: 0.3528

The information below is about HL_8C3A_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6R6P|1|5|G|2624
6R6P|1|5|U|2625
6R6P|1|5|U|2626
6R6P|1|5|C|2627
6R6P|1|5|U|2628
6R6P|1|5|C|2629
6R6P|1|5|U|2630
6R6P|1|5|U|2631
6R6P|1|5|U|2632

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain R

eL19

Chain U

Ribosomal protein L22

Chain d

eL31