HL_6R6P_061

3D structure

PDB id

6R6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCGAGG

Length

6 nucleotides

Bulged bases

6R6P|1|5|G|4104

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R6P_061 not in the Motif Atlas

Geometric match to HL_6CK5_001

Geometric discrepancy: 0.2763

The information below is about HL_6CK5_001

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

60

Unit IDs

6R6P|1|5|C|4102
6R6P|1|5|C|4103
6R6P|1|5|G|4104
6R6P|1|5|A|4105
6R6P|1|5|G|4106
6R6P|1|5|G|4107

Current chains

Chain 5

28S ribosomal RNA

Nearby chains