HL_6R6P_062

3D structure

PDB id

6R6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCGCGCC

Length

7 nucleotides

Bulged bases

6R6P|1|5|C|4142, 6R6P|1|5|C|4144

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R6P_062 not in the Motif Atlas

Geometric match to HL_7KI3_001

Geometric discrepancy: 0.1383

The information below is about HL_7KI3_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6R6P|1|5|G|4139
6R6P|1|5|C|4140
6R6P|1|5|G|4141
6R6P|1|5|C|4142
6R6P|1|5|G|4143
6R6P|1|5|C|4144
6R6P|1|5|C|4145

Current chains

Chain 5

28S ribosomal RNA

Nearby chains