HL_6R6P_076

3D structure

PDB id

6R6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

6R6P|1|5|G|4694, 6R6P|1|5|C|4698

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R6P_076 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.0792

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6R6P|1|5|C|4688
6R6P|1|5|U|4689
6R6P|1|5|G|4690
6R6P|1|5|A|4691
6R6P|1|5|A|4692
6R6P|1|5|C|4693
6R6P|1|5|G|4694
6R6P|1|5|C|4695
6R6P|1|5|C|4696
6R6P|1|5|U|4697
6R6P|1|5|C|4698
6R6P|1|5|U|4699
6R6P|1|5|A|4700
6R6P|1|5|A|4701
6R6P|1|5|G|4702

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain H

uL6

Chain O

uL13

Chain m

eL40