HL_6R6P_078

3D structure

PDB id

6R6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

6R6P|1|5|U|4976

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R6P_078 not in the Motif Atlas

Homologous match to HL_8C3A_071

Geometric discrepancy: 0.1185

The information below is about HL_8C3A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

6R6P|1|5|G|4975
6R6P|1|5|U|4976
6R6P|1|5|A|4977
6R6P|1|5|G|4978
6R6P|1|5|A|4979
6R6P|1|5|C|4980
6R6P|1|5|G|4981
6R6P|1|5|A|4982
6R6P|1|5|C|4983

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

uL3

Chain P

uL22

Chain d

eL31