HL_6R6P_079

3D structure

PDB id

6R6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUCCCUCG

Length

8 nucleotides

Bulged bases

6R6P|1|5|U|5026, 6R6P|1|5|C|5027

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R6P_079 not in the Motif Atlas

Geometric match to HL_8C3A_203

Geometric discrepancy: 0.3248

The information below is about HL_8C3A_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.3

Basepair signature

cWW-F-F

Number of instances in this motif group

23

Unit IDs

6R6P|1|5|C|5021
6R6P|1|5|U|5022
6R6P|1|5|C|5023
6R6P|1|5|C|5024
6R6P|1|5|C|5025
6R6P|1|5|U|5026
6R6P|1|5|C|5027
6R6P|1|5|G|5028

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain CC

40S ribosomal protein S8

Chain U

Ribosomal protein L22