HL_6R6P_089

3D structure

PDB id

6R6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUCGCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R6P_089 not in the Motif Atlas

Geometric match to HL_7RQB_047

Geometric discrepancy: 0.2437

The information below is about HL_7RQB_047

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

6R6P|1|K|U|197
6R6P|1|K|U|198
6R6P|1|K|C|199
6R6P|1|K|G|200
6R6P|1|K|C|201
6R6P|1|K|G|202

Current chains

Chain K

18S rRNA

Nearby chains

Chain CC

40S ribosomal protein S8