HL_6R7Q_005
3D structure
- PDB id
- 6R7Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex with Sec61.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- ACUUAAAAU
- Length
- 9 nucleotides
- Bulged bases
- 6R7Q|1|3|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6R7Q_005 not in the Motif Atlas
- Homologous match to HL_4TUE_034
- Geometric discrepancy: 0.3188
- The information below is about HL_4TUE_034
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
6R7Q|1|3|A|31
6R7Q|1|3|C|32
6R7Q|1|3|U|33
6R7Q|1|3|U|34
6R7Q|1|3|A|35
6R7Q|1|3|A|36
6R7Q|1|3|A|37
6R7Q|1|3|A|38
6R7Q|1|3|U|39
Current chains
- Chain 3
- E-tRNA
Nearby chains
- Chain 2
- Transfer RNA; tRNA
- Chain 4
- messenger RNA
- Chain FF
- Ribosomal protein S28
- Chain K
- Small subunit ribosomal RNA; SSU rRNA
- Chain MM
- uS11
- Chain y
- Ribosomal protein S5
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