HL_6R7Q_010
3D structure
- PDB id
- 6R7Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex with Sec61.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CGCGGCG
- Length
- 7 nucleotides
- Bulged bases
- 6R7Q|1|5|G|134, 6R7Q|1|5|G|135, 6R7Q|1|5|C|136
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6R7Q_010 not in the Motif Atlas
- Geometric match to HL_5J7L_143
- Geometric discrepancy: 0.127
- The information below is about HL_5J7L_143
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75660.5
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 19
Unit IDs
6R7Q|1|5|C|131
6R7Q|1|5|G|132
6R7Q|1|5|C|133
6R7Q|1|5|G|134
6R7Q|1|5|G|135
6R7Q|1|5|C|136
6R7Q|1|5|G|137
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain N
- Ribosomal protein L15
- Chain h
- uL29
- Chain j
- Ribosomal protein L37
Coloring options: