HL_6R7Q_039

3D structure

PDB id

6R7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with Sec61.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

6R7Q|1|5|G|2421, 6R7Q|1|5|U|2425

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R7Q_039 not in the Motif Atlas

Homologous match to HL_5TBW_032

Geometric discrepancy: 0.1673

The information below is about HL_5TBW_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

6R7Q|1|5|A|2420
6R7Q|1|5|G|2421
6R7Q|1|5|C|2422
6R7Q|1|5|A|2423
6R7Q|1|5|G|2424
6R7Q|1|5|U|2425
6R7Q|1|5|U|2426

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain P

uL22

Chain R

eL19

Chain l

eL39