HL_6R7Q_047

3D structure

PDB id

6R7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with Sec61.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGUUCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R7Q_047 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.2516

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

6R7Q|1|5|G|2705
6R7Q|1|5|G|2706
6R7Q|1|5|U|2707
6R7Q|1|5|U|2708
6R7Q|1|5|C|2709
6R7Q|1|5|C|2710

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain R

eL19

Chain X

uL23

Chain XX

Protein transport protein Sec61 subunit alpha isoform 1