HL_6R7Q_073

3D structure

PDB id

6R7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with Sec61.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

6R7Q|1|5|G|4694, 6R7Q|1|5|C|4698

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R7Q_073 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.0789

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6R7Q|1|5|C|4688
6R7Q|1|5|U|4689
6R7Q|1|5|G|4690
6R7Q|1|5|A|4691
6R7Q|1|5|A|4692
6R7Q|1|5|C|4693
6R7Q|1|5|G|4694
6R7Q|1|5|C|4695
6R7Q|1|5|C|4696
6R7Q|1|5|U|4697
6R7Q|1|5|C|4698
6R7Q|1|5|U|4699
6R7Q|1|5|A|4700
6R7Q|1|5|A|4701
6R7Q|1|5|G|4702

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain H

uL6

Chain O

uL13

Chain m

eL40