HL_6R7Q_098

3D structure

PDB id

6R7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with Sec61.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases

6R7Q|1|K|G|821

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R7Q_098 not in the Motif Atlas

Homologous match to HL_4V88_203

Geometric discrepancy: 0.108

The information below is about HL_4V88_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

6R7Q|1|K|U|820
6R7Q|1|K|G|821
6R7Q|1|K|U|822
6R7Q|1|K|U|823
6R7Q|1|K|C|824
6R7Q|1|K|A|825
6R7Q|1|K|A|826
6R7Q|1|K|A|827
6R7Q|1|K|G|828

Current chains

Chain K

18S ribosomal RNA

Nearby chains

Chain DD

Ribosomal protein S9 (Predicted)

Chain NN

eS24

Chain x

40S ribosomal protein S4