HL_6R84_055
3D structure
- PDB id
- 6R84 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state with Arb1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CUGGGGCGG
- Length
- 9 nucleotides
- Bulged bases
- 6R84|1|1|G|2618
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6R84_055 not in the Motif Atlas
- Homologous match to HL_5TBW_054
- Geometric discrepancy: 0.1832
- The information below is about HL_5TBW_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_47383.2
- Basepair signature
- cWW-F-F-cWW-F-F
- Number of instances in this motif group
- 11
Unit IDs
6R84|1|1|C|2616
6R84|1|1|U|2617
6R84|1|1|G|2618
6R84|1|1|G|2619
6R84|1|1|G|2620
6R84|1|1|G|2621
6R84|1|1|C|2622
6R84|1|1|G|2623
6R84|1|1|G|2624
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain A
- ABC transporter ATP-binding protein ARB1
- Chain B
- Transfer RNA; tRNA
- Chain d
- 60S ribosomal protein L29
- Chain s
- 60S ribosomal protein L10
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