HL_6R84_068

3D structure

PDB id

6R84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state with Arb1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

6R84|1|1|G|3116

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R84_068 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.108

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6R84|1|1|C|3110
6R84|1|1|U|3111
6R84|1|1|G|3112
6R84|1|1|A|3113
6R84|1|1|A|3114
6R84|1|1|C|3115
6R84|1|1|G|3116
6R84|1|1|C|3117
6R84|1|1|C|3118
6R84|1|1|U|3119
6R84|1|1|C|3120
6R84|1|1|U|3121
6R84|1|1|A|3122
6R84|1|1|A|3123
6R84|1|1|G|3124

Current chains

Chain 1

25S rRNA

Nearby chains

Chain 7

60S ribosomal protein L9-A

Chain Q

60S ribosomal protein L16-A

Chain o

Ubiquitin-60S ribosomal protein L40