HL_6R86_005

3D structure

PDB id

6R86 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast Vms1-60S ribosomal subunit complex (post-state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUGGAACA

Length

8 nucleotides

Bulged bases

6R86|1|1|C|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R86_005 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.1149

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

6R86|1|1|U|194
6R86|1|1|U|195
6R86|1|1|G|196
6R86|1|1|G|197
6R86|1|1|A|198
6R86|1|1|A|199
6R86|1|1|C|200
6R86|1|1|A|201

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain a

60S ribosomal protein L26-A

Chain g

60S ribosomal protein L32