HL_6R86_034

3D structure

PDB id

6R86 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast Vms1-60S ribosomal subunit complex (post-state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAUUUUAUGC

Length

10 nucleotides

Bulged bases

6R86|1|1|U|1572

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R86_034 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.3629

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6R86|1|1|G|1565
6R86|1|1|A|1566
6R86|1|1|U|1567
6R86|1|1|U|1568
6R86|1|1|U|1569
6R86|1|1|U|1570
6R86|1|1|A|1571
6R86|1|1|U|1572
6R86|1|1|G|1573
6R86|1|1|C|1574

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain Z

60S ribosomal protein L25