HL_6R86_064

3D structure

PDB id

6R86 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast Vms1-60S ribosomal subunit complex (post-state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUGUUCA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R86_064 not in the Motif Atlas

Homologous match to HL_8C3A_064

Geometric discrepancy: 0.1335

The information below is about HL_8C3A_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36430.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6R86|1|1|U|2920
6R86|1|1|U|2921
6R86|1|1|G|2922
6R86|1|1|U|2923
6R86|1|1|U|2924
6R86|1|1|C|2925
6R86|1|1|A|2926

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain F

60S ribosomal protein L3

Chain R

Protein VMS1,Protein VMS1,Protein VMS1,Protein VMS1,Protein VMS1,Protein VMS1,Protein VMS1,Protein VMS1,Protein VMS1,Protein VMS1