HL_6R87_023

3D structure

PDB id

6R87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAAAUG

Length

7 nucleotides

Bulged bases

6R87|1|1|U|1028

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R87_023 not in the Motif Atlas

Homologous match to HL_5TBW_023

Geometric discrepancy: 0.4508

The information below is about HL_5TBW_023

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6R87|1|1|C|1023
6R87|1|1|G|1024
6R87|1|1|A|1025
6R87|1|1|A|1026
6R87|1|1|A|1027
6R87|1|1|U|1028
6R87|1|1|G|1029

Current chains

Chain 1

25S rRNA

Nearby chains

Chain M

60S ribosomal protein L11-B