HL_6R87_035

3D structure

PDB id

6R87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUUAAGAUUC

Length

10 nucleotides

Bulged bases

6R87|1|1|U|1606, 6R87|1|1|U|1607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R87_035 not in the Motif Atlas

Homologous match to HL_8C3A_035

Geometric discrepancy: 0.1179

The information below is about HL_8C3A_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6R87|1|1|G|1599
6R87|1|1|U|1600
6R87|1|1|U|1601
6R87|1|1|A|1602
6R87|1|1|A|1603
6R87|1|1|G|1604
6R87|1|1|A|1605
6R87|1|1|U|1606
6R87|1|1|U|1607
6R87|1|1|C|1608

Current chains

Chain 1

25S rRNA

Nearby chains

Chain T

60S ribosomal protein L19-A

Chain Z

60S ribosomal protein L25

Chain i

60S ribosomal protein L34-A