HL_6R87_036

3D structure

PDB id

6R87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGUAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R87_036 not in the Motif Atlas

Homologous match to HL_8C3A_036

Geometric discrepancy: 0.0815

The information below is about HL_8C3A_036

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6R87|1|1|G|1634
6R87|1|1|G|1635
6R87|1|1|U|1636
6R87|1|1|A|1637
6R87|1|1|A|1638
6R87|1|1|C|1639

Current chains

Chain 1

25S rRNA

Nearby chains

Chain b

60S ribosomal protein L27-A

Chain i

60S ribosomal protein L34-A