HL_6R87_049

3D structure

PDB id

6R87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UAACUAUGA

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R87_049 not in the Motif Atlas

Geometric match to HL_361D_002

Geometric discrepancy: 0.3246

The information below is about HL_361D_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

6R87|1|1|U|2254
6R87|1|1|A|2255
6R87|1|1|A|2256
6R87|1|1|C|2257
6R87|1|1|U|2258
6R87|1|1|A|2259
6R87|1|1|U|2260
6R87|1|1|G|2261
6R87|1|1|A|2262

Current chains

Chain 1

25S rRNA

Nearby chains

Chain R

Protein VMS1,Vms1,Protein VMS1,Vms1