HL_6R87_055

3D structure

PDB id

6R87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

6R87|1|1|G|2618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R87_055 not in the Motif Atlas

Homologous match to HL_8C3A_055

Geometric discrepancy: 0.1401

The information below is about HL_8C3A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

6R87|1|1|C|2616
6R87|1|1|U|2617
6R87|1|1|G|2618
6R87|1|1|G|2619
6R87|1|1|G|2620
6R87|1|1|G|2621
6R87|1|1|C|2622
6R87|1|1|G|2623
6R87|1|1|G|2624

Current chains

Chain 1

25S rRNA

Nearby chains

Chain B

Transfer RNA; tRNA

Chain d

60S ribosomal protein L29

Chain s

60S ribosomal protein L10