HL_6R87_066

3D structure

PDB id

6R87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R87_066 not in the Motif Atlas

Homologous match to HL_5TBW_065

Geometric discrepancy: 0.1592

The information below is about HL_5TBW_065

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6R87|1|1|C|3025
6R87|1|1|G|3026
6R87|1|1|A|3027
6R87|1|1|G|3028
6R87|1|1|A|3029
6R87|1|1|G|3030

Current chains

Chain 1

25S rRNA

Nearby chains

Chain 7

60S ribosomal protein L9-A

Chain X

Eukaryotic translation initiation factor 6

Chain o

Ubiquitin-60S ribosomal protein L40