HL_6R87_068

3D structure

PDB id

6R87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

6R87|1|1|G|3116, 6R87|1|1|C|3120

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R87_068 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.0952

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6R87|1|1|C|3110
6R87|1|1|U|3111
6R87|1|1|G|3112
6R87|1|1|A|3113
6R87|1|1|A|3114
6R87|1|1|C|3115
6R87|1|1|G|3116
6R87|1|1|C|3117
6R87|1|1|C|3118
6R87|1|1|U|3119
6R87|1|1|C|3120
6R87|1|1|U|3121
6R87|1|1|A|3122
6R87|1|1|A|3123
6R87|1|1|G|3124

Current chains

Chain 1

25S rRNA

Nearby chains

Chain 7

60S ribosomal protein L9-A

Chain Q

60S ribosomal protein L16-A

Chain o

Ubiquitin-60S ribosomal protein L40