HL_6R87_075
3D structure
- PDB id
- 6R87 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UGAAUUGCAGAAUUCCGUGAA
- Length
- 21 nucleotides
- Bulged bases
- 6R87|1|4|C|84, 6R87|1|4|U|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6R87_075 not in the Motif Atlas
- Homologous match to HL_8P9A_187
- Geometric discrepancy: 0.327
- The information below is about HL_8P9A_187
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_68571.1
- Basepair signature
- cWW-tSH-tHS-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
6R87|1|4|U|69
6R87|1|4|G|70
6R87|1|4|A|71
6R87|1|4|A|72
6R87|1|4|U|73
6R87|1|4|U|74
6R87|1|4|G|75
6R87|1|4|C|76
6R87|1|4|A|77
6R87|1|4|G|78
6R87|1|4|A|79
6R87|1|4|A|80
6R87|1|4|U|81
6R87|1|4|U|82
6R87|1|4|C|83
6R87|1|4|C|84
6R87|1|4|G|85
6R87|1|4|U|86
6R87|1|4|G|87
6R87|1|4|A|88
6R87|1|4|A|89
Current chains
- Chain 4
- 5.8S rRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain a
- 60S ribosomal protein L26-A
- Chain j
- 60S ribosomal protein L35-A
- Chain l
- 60S ribosomal protein L37-A
- Chain n
- 60S ribosomal protein L39
Coloring options: