HL_6R87_078
3D structure
- PDB id
- 6R87 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UAGUCGGUAG
- Length
- 10 nucleotides
- Bulged bases
- 6R87|1|B|U|16, 6R87|1|B|C|17, 6R87|1|B|G|18, 6R87|1|B|G|19, 6R87|1|B|U|20
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6R87_078 not in the Motif Atlas
- Homologous match to HL_4YYE_001
- Geometric discrepancy: 0.1454
- The information below is about HL_4YYE_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6R87|1|B|U|13
6R87|1|B|A|14
6R87|1|B|G|15
6R87|1|B|U|16
6R87|1|B|C|17
6R87|1|B|G|18
6R87|1|B|G|19
6R87|1|B|U|20
6R87|1|B|A|21
6R87|1|B|G|22
Current chains
- Chain B
- tRNA-Ala
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain M
- 60S ribosomal protein L11-B
- Chain R
- Protein VMS1,Vms1,Protein VMS1,Vms1
Coloring options: