HL_6R87_081

3D structure

PDB id

6R87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

ACCUUU

Length

6 nucleotides

Bulged bases

6R87|1|1|C|1762

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R87_081 not in the Motif Atlas

Geometric match to HL_4YAZ_004

Geometric discrepancy: 0.3797

The information below is about HL_4YAZ_004

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

6R87|1|1|A|1760
6R87|1|1|C|1761
6R87|1|1|C|1762
6R87|1|1|U|1763
6R87|1|1|U|1764
6R87|1|1|U|1765

Current chains

Chain 1

25S rRNA

Nearby chains

Chain T

60S ribosomal protein L19-A