HL_6RBD_014
3D structure
- PDB id
- 6RBD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 1 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.47 Å
Loop
- Sequence
- AAUGUAAAUACCU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6RBD_014 not in the Motif Atlas
- Homologous match to HL_4V88_199
- Geometric discrepancy: 0.1246
- The information below is about HL_4V88_199
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_05304.1
- Basepair signature
- cWW-cWW-F-F-tSH-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6RBD|1|2|A|520
6RBD|1|2|A|521
6RBD|1|2|U|522
6RBD|1|2|G|523
6RBD|1|2|U|524
6RBD|1|2|A|525
6RBD|1|2|A|526
6RBD|1|2|A|527
6RBD|1|2|U|528
6RBD|1|2|A|529
6RBD|1|2|C|530
6RBD|1|2|C|531
6RBD|1|2|U|532
Current chains
- Chain 2
- 20S ribosomal RNA
Nearby chains
- Chain E
- 40S ribosomal protein S4-A
- Chain J
- 40S ribosomal protein S9-A
- Chain Y
- 40S ribosomal protein S24-A
- Chain k
- Ribosome biogenesis protein TSR1
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