HL_6RBD_015
3D structure
- PDB id
- 6RBD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 1 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.47 Å
Loop
- Sequence
- GGCAAGUCUGGUGCCAGCAGC
- Length
- 21 nucleotides
- Bulged bases
- 6RBD|1|2|U|558, 6RBD|1|2|C|565, 6RBD|1|2|C|566, 6RBD|1|2|A|567, 6RBD|1|2|A|570
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6RBD|1|2|G|552
6RBD|1|2|G|553
6RBD|1|2|C|554
6RBD|1|2|A|555
6RBD|1|2|A|556
6RBD|1|2|G|557
6RBD|1|2|U|558
6RBD|1|2|C|559
6RBD|1|2|U|560
6RBD|1|2|G|561
6RBD|1|2|G|562
6RBD|1|2|U|563
6RBD|1|2|G|564
6RBD|1|2|C|565
6RBD|1|2|C|566
6RBD|1|2|A|567
6RBD|1|2|G|568
6RBD|1|2|C|569
6RBD|1|2|A|570
6RBD|1|2|G|571
6RBD|1|2|C|572
Current chains
- Chain 2
- 20S ribosomal RNA
Nearby chains
- Chain C
- 40S ribosomal protein S2
- Chain J
- 40S ribosomal protein S9-A
- Chain X
- 40S ribosomal protein S23-A
- Chain e
- 40S ribosomal protein S30-A
- Chain k
- Ribosome biogenesis protein TSR1
- Chain l
- Serine/threonine-protein kinase RIO2
Coloring options: