HL_6RBD_022

3D structure

PDB id

6RBD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

GAUCAGAUACC

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6RBD_022 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.3194

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6RBD|1|2|G|997
6RBD|1|2|A|998
6RBD|1|2|U|999
6RBD|1|2|C|1000
6RBD|1|2|A|1001
6RBD|1|2|G|1002
6RBD|1|2|A|1003
6RBD|1|2|U|1004
6RBD|1|2|A|1005
6RBD|1|2|C|1006
6RBD|1|2|C|1007

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain O

40S ribosomal protein S14-A

Chain h

Pre-rRNA-processing protein PNO1