HL_6RBD_025

3D structure

PDB id

6RBD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6RBD_025 not in the Motif Atlas

Homologous match to HL_4V88_211

Geometric discrepancy: 0.1

The information below is about HL_4V88_211

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6RBD|1|2|C|1121
6RBD|1|2|G|1122
6RBD|1|2|C|1123
6RBD|1|2|A|1124
6RBD|1|2|A|1125
6RBD|1|2|G|1126

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain y

Dimethyladenosine transferase