HL_6RBD_038

3D structure

PDB id

6RBD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

6RBD|1|2|U|903

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6RBD_038 not in the Motif Atlas

Homologous match to HL_8P9A_209

Geometric discrepancy: 0.4007

The information below is about HL_8P9A_209

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38491.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

6RBD|1|2|A|900
6RBD|1|2|G|901
6RBD|1|2|G|902
6RBD|1|2|U|903
6RBD|1|2|G|904
6RBD|1|2|A|905
6RBD|1|2|A|906
6RBD|1|2|A|907
6RBD|1|2|U|908
6RBD|1|2|U|909

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain O

40S ribosomal protein S14-A

Chain h

Pre-rRNA-processing protein PNO1