HL_6RFL_001
3D structure
- PDB id
- 6RFL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the complete Vaccinia DNA-dependent RNA polymerase complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.76 Å
Loop
- Sequence
- UAAUGGUUAG
- Length
- 10 nucleotides
- Bulged bases
- 6RFL|1|U|U|16, 6RFL|1|U|G|17, 6RFL|1|U|G|18||A, 6RFL|1|U|U|19||A, 6RFL|1|U|U|20||A
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6RFL_001 not in the Motif Atlas
- Homologous match to HL_4YYE_001
- Geometric discrepancy: 0.1255
- The information below is about HL_4YYE_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6RFL|1|U|U|13
6RFL|1|U|A|14
6RFL|1|U|A|15
6RFL|1|U|U|16
6RFL|1|U|G|17
6RFL|1|U|G|18||A
6RFL|1|U|U|19||A
6RFL|1|U|U|20||A
6RFL|1|U|A|21
6RFL|1|U|G|22
Current chains
- Chain U
- chr17.trna16-GlnTTG
Nearby chains
- Chain G
- DNA-dependent RNA polymerase subunit rpo18
- Chain I
- Putative H4L RNA polymerase-associated transcription factor RAP94
- Chain K
- Transcription factor VETF 82kDa large subunit
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