HL_6RI5_005
3D structure
- PDB id
- 6RI5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UUGGAACA
- Length
- 8 nucleotides
- Bulged bases
- 6RI5|1|A|C|200
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6RI5_005 not in the Motif Atlas
- Homologous match to HL_5TBW_005
- Geometric discrepancy: 0.1378
- The information below is about HL_5TBW_005
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_58705.1
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 23
Unit IDs
6RI5|1|A|U|194
6RI5|1|A|U|195
6RI5|1|A|G|196
6RI5|1|A|G|197
6RI5|1|A|A|198
6RI5|1|A|A|199
6RI5|1|A|C|200
6RI5|1|A|A|201
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain X
- 60S ribosomal protein L26-A
- Chain e
- 60S ribosomal protein L32
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