HL_6RI5_054

3D structure

PDB id

6RI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

6RI5|1|A|G|2618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6RI5_054 not in the Motif Atlas

Homologous match to HL_5TBW_054

Geometric discrepancy: 0.1448

The information below is about HL_5TBW_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

6RI5|1|A|C|2616
6RI5|1|A|U|2617
6RI5|1|A|G|2618
6RI5|1|A|G|2619
6RI5|1|A|G|2620
6RI5|1|A|G|2621
6RI5|1|A|C|2622
6RI5|1|A|G|2623
6RI5|1|A|G|2624

Current chains

Chain A

25S RNA

Nearby chains

Chain a

60S ribosomal protein L29

Chain q

60S ribosomal protein L10