HL_6RI5_056

3D structure

PDB id

6RI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AACAGAAAU

Length

9 nucleotides

Bulged bases

6RI5|1|A|A|2678, 6RI5|1|A|A|2679

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6RI5_056 not in the Motif Atlas

Homologous match to HL_8C3A_057

Geometric discrepancy: 0.2851

The information below is about HL_8C3A_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6RI5|1|A|A|2673
6RI5|1|A|A|2674
6RI5|1|A|C|2675
6RI5|1|A|A|2676
6RI5|1|A|G|2677
6RI5|1|A|A|2678
6RI5|1|A|A|2679
6RI5|1|A|A|2680
6RI5|1|A|U|2681

Current chains

Chain A

25S RNA

Nearby chains

Chain E

60S ribosomal protein L11-A