HL_6RI5_065

3D structure

PDB id

6RI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6RI5_065 not in the Motif Atlas

Geometric match to HL_3OXE_002

Geometric discrepancy: 0.1093

The information below is about HL_3OXE_002

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37569.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

11

Unit IDs

6RI5|1|A|C|3025
6RI5|1|A|G|3026
6RI5|1|A|A|3027
6RI5|1|A|G|3028
6RI5|1|A|A|3029
6RI5|1|A|G|3030

Current chains

Chain A

25S RNA

Nearby chains

Chain F

60S ribosomal protein L9-A

Chain n

Eukaryotic translation initiation factor 6

Chain t

Ubiquitin-60S ribosomal protein L40