HL_6RI5_067

3D structure

PDB id

6RI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

6RI5|1|A|G|3116, 6RI5|1|A|C|3120

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6RI5_067 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.0889

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6RI5|1|A|C|3110
6RI5|1|A|U|3111
6RI5|1|A|G|3112
6RI5|1|A|A|3113
6RI5|1|A|A|3114
6RI5|1|A|C|3115
6RI5|1|A|G|3116
6RI5|1|A|C|3117
6RI5|1|A|C|3118
6RI5|1|A|U|3119
6RI5|1|A|C|3120
6RI5|1|A|U|3121
6RI5|1|A|A|3122
6RI5|1|A|A|3123
6RI5|1|A|G|3124

Current chains

Chain A

25S RNA

Nearby chains

Chain F

60S ribosomal protein L9-A

Chain J

60S ribosomal protein L16-B

Chain t

Ubiquitin-60S ribosomal protein L40