HL_6RI5_079

3D structure

PDB id

6RI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGUAACAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6RI5_079 not in the Motif Atlas

Homologous match to HL_8P9A_140

Geometric discrepancy: 0.348

The information below is about HL_8P9A_140

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

12

Unit IDs

6RI5|1|A|U|1267
6RI5|1|A|G|1268
6RI5|1|A|U|1269
6RI5|1|A|A|1270
6RI5|1|A|A|1271
6RI5|1|A|C|1272
6RI5|1|A|A|1273
6RI5|1|A|A|1274

Current chains

Chain A

25S RNA

Nearby chains

Chain t

Ubiquitin-60S ribosomal protein L40