HL_6RM3_018

3D structure

PDB id

6RM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Evolutionary compaction and adaptation visualized by the structure of the dormant microsporidian ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AUUAAAUU

Length

8 nucleotides

Bulged bases

6RM3|1|L50|A|786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6RM3_018 not in the Motif Atlas

Geometric match to HL_3R4F_001

Geometric discrepancy: 0.1653

The information below is about HL_3R4F_001

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

19

Unit IDs

6RM3|1|L50|A|781
6RM3|1|L50|U|782
6RM3|1|L50|U|783
6RM3|1|L50|A|784
6RM3|1|L50|A|785
6RM3|1|L50|A|786
6RM3|1|L50|U|787
6RM3|1|L50|U|788

Current chains

Chain L50

23S rRNA

Nearby chains

Chain LBB

eL29

Chain LD0

uL18

Chain LT0

eL21