HL_6RM3_037

3D structure

PDB id

6RM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Evolutionary compaction and adaptation visualized by the structure of the dormant microsporidian ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGUAUUUACA

Length

10 nucleotides

Bulged bases

6RM3|1|L50|U|1541, 6RM3|1|L50|U|1543, 6RM3|1|L50|C|1547

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6RM3_037 not in the Motif Atlas

Geometric match to HL_4OOG_001

Geometric discrepancy: 0.0999

The information below is about HL_4OOG_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_12626.2

Basepair signature

cWW-F

Number of instances in this motif group

17

Unit IDs

6RM3|1|L50|U|1539
6RM3|1|L50|G|1540
6RM3|1|L50|U|1541
6RM3|1|L50|A|1542
6RM3|1|L50|U|1543
6RM3|1|L50|U|1544
6RM3|1|L50|U|1545
6RM3|1|L50|A|1546
6RM3|1|L50|C|1547
6RM3|1|L50|A|1548

Current chains

Chain L50

23S rRNA

Nearby chains

Chain LA0

uL2

Chain LPP

eL43

Chain S60

Small subunit ribosomal RNA; SSU rRNA