HL_6RM3_042

3D structure

PDB id

6RM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Evolutionary compaction and adaptation visualized by the structure of the dormant microsporidian ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

6RM3|1|L50|G|1893

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6RM3_042 not in the Motif Atlas

Homologous match to HL_5TBW_054

Geometric discrepancy: 0.1724

The information below is about HL_5TBW_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

6RM3|1|L50|C|1891
6RM3|1|L50|U|1892
6RM3|1|L50|G|1893
6RM3|1|L50|G|1894
6RM3|1|L50|G|1895
6RM3|1|L50|G|1896
6RM3|1|L50|C|1897
6RM3|1|L50|G|1898
6RM3|1|L50|G|1899

Current chains

Chain L50

23S rRNA

Nearby chains

Chain LBB

eL29

Chain LI0

uL16

Chain LNN

MDF2