HL_6RM3_045

3D structure

PDB id

6RM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Evolutionary compaction and adaptation visualized by the structure of the dormant microsporidian ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UAUAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6RM3_045 not in the Motif Atlas

Homologous match to HL_8C3A_058

Geometric discrepancy: 0.1713

The information below is about HL_8C3A_058

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

26

Unit IDs

6RM3|1|L50|U|1968
6RM3|1|L50|A|1969
6RM3|1|L50|U|1970
6RM3|1|L50|A|1971
6RM3|1|L50|A|1972
6RM3|1|L50|G|1973
6RM3|1|L50|G|1974
6RM3|1|L50|G|1975

Current chains

Chain L50

23S rRNA

Nearby chains

Chain LI0

uL16

Chain LT0

eL21