HL_6RM3_055

3D structure

PDB id

6RM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Evolutionary compaction and adaptation visualized by the structure of the dormant microsporidian ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUGAAAGCCUCUUAAG

Length

16 nucleotides

Bulged bases

6RM3|1|L50|C|2381, 6RM3|1|L50|U|2383

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6RM3_055 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.2265

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6RM3|1|L50|C|2371
6RM3|1|L50|U|2372
6RM3|1|L50|G|2373
6RM3|1|L50|A|2374
6RM3|1|L50|A|2375
6RM3|1|L50|A|2376
6RM3|1|L50|G|2377
6RM3|1|L50|C|2378
6RM3|1|L50|C|2379
6RM3|1|L50|U|2380
6RM3|1|L50|C|2381
6RM3|1|L50|U|2382
6RM3|1|L50|U|2383
6RM3|1|L50|A|2384
6RM3|1|L50|A|2385
6RM3|1|L50|G|2386

Current chains

Chain L50

23S rRNA

Nearby chains

Chain LH0

uL6

Chain LMM

eL40

Chain LO0

uL13